IL_7V08_069

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

GAAUAA(OMU)G*C(OMU)A(PSU)C

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7V08|1|1|G|1882
7V08|1|1|A|1883
7V08|1|1|A|1884
7V08|1|1|U|1885
7V08|1|1|A|1886
7V08|1|1|A|1887
7V08|1|1|OMU|1888
7V08|1|1|G|1889
*
7V08|1|1|C|2346
7V08|1|1|OMU|2347
7V08|1|1|A|2348
7V08|1|1|PSU|2349
7V08|1|1|C|2350

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A