IL_7V08_076

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

C(PSU)G*CGAG

Length

7 nucleotides

Bulged bases

7V08|1|1|A|2324

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_076 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2649

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7V08|1|1|C|2128
7V08|1|1|PSU|2129
7V08|1|1|G|2130
*
7V08|1|1|C|2322
7V08|1|1|G|2323
7V08|1|1|A|2324
7V08|1|1|G|2325

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain m

Nucleolar GTP-binding protein 2

Chain p

60S ribosomal protein L43-A