IL_7V2L_049

3D structure

PDB id

7V2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2L_049 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.272

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7V2L|1|A|C|1241
7V2L|1|A|C|1242
7V2L|1|A|A|1243
7V2L|1|A|C|1244
*
7V2L|1|A|G|1255
7V2L|1|A|G|1256
7V2L|1|A|A|1257
7V2L|1|A|G|1258

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain V

30S ribosomal protein Thx