IL_7V2M_035

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

7V2M|1|A|G|904

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2M_035 not in the Motif Atlas

Homologous match to IL_5J7L_040

Geometric discrepancy: 0.4183

The information below is about IL_5J7L_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7V2M|1|A|G|903
7V2M|1|A|G|904
7V2M|1|A|G|905
*
7V2M|1|A|U|1373
7V2M|1|A|U|1374

Current chains

Chain A

16s ribosomal RNA

Nearby chains