3D structure

PDB id
7V2M (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophilus 30S ribosome with KsgA, class K1k4
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGG*UU
Length
5 nucleotides
Bulged bases
7V2M|1|A|G|904
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7V2M_035 not in the Motif Atlas
Homologous match to IL_5J7L_040
Geometric discrepancy: 0.4183
The information below is about IL_5J7L_040
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

7V2M|1|A|G|903
7V2M|1|A|G|904
7V2M|1|A|G|905
*
7V2M|1|A|U|1373
7V2M|1|A|U|1374

Current chains

Chain A
16s ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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