3D structure

PDB id
7V2M (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophilus 30S ribosome with KsgA, class K1k4
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7V2M_039 not in the Motif Atlas
Geometric match to IL_5TBW_047
Geometric discrepancy: 0.1829
The information below is about IL_5TBW_047
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

7V2M|1|A|C|987
7V2M|1|A|G|988
7V2M|1|A|G|989
*
7V2M|1|A|C|998
7V2M|1|A|U|999
7V2M|1|A|G|1000

Current chains

Chain A
16s ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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