IL_7V2M_054

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAGC*GUGACU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2M_054 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3836

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7V2M|1|A|G|1398
7V2M|1|A|G|1399
7V2M|1|A|G|1400
7V2M|1|A|A|1401
7V2M|1|A|G|1402
7V2M|1|A|C|1403
*
7V2M|1|A|G|1458
7V2M|1|A|U|1459
7V2M|1|A|G|1460
7V2M|1|A|A|1461
7V2M|1|A|C|1462
7V2M|1|A|U|1463

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain U

Ribosomal RNA small subunit methyltransferase A