IL_7V2M_056

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2M_056 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.1147

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

7V2M|1|A|C|1414
7V2M|1|A|G|1415
7V2M|1|A|A|1416
7V2M|1|A|A|1417
7V2M|1|A|G|1418
*
7V2M|1|A|C|1444
7V2M|1|A|G|1445
7V2M|1|A|A|1446
7V2M|1|A|G|1447

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20