IL_7V2M_063

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

7V2M|1|A|C|1037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2M_063 not in the Motif Atlas

Homologous match to IL_6CZR_154

Geometric discrepancy: 0.1556

The information below is about IL_6CZR_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

7V2M|1|A|U|1035
7V2M|1|A|G|1036
7V2M|1|A|C|1037
7V2M|1|A|A|1038
7V2M|1|A|U|1039
*
7V2M|1|A|A|1186
7V2M|1|A|U|1187
7V2M|1|A|G|1188

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z