IL_7V2N_047

3D structure

PDB id

7V2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2N_047 not in the Motif Atlas

Geometric match to IL_4LFB_053

Geometric discrepancy: 0.3724

The information below is about IL_4LFB_053

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_58310.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

25

Unit IDs

7V2N|1|A|C|1241
7V2N|1|A|C|1242
*
7V2N|1|A|G|1256
7V2N|1|A|A|1257
7V2N|1|A|G|1258

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain V

30S ribosomal protein Thx