3D structure

PDB id
7V2O (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophilus 30S ribosome with KsgA, class K4
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
7V2O|1|A|A|686
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7V2O_030 not in the Motif Atlas
Homologous match to IL_6CZR_143
Geometric discrepancy: 0.2228
The information below is about IL_6CZR_143
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37722.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
2

Unit IDs

7V2O|1|A|G|667
7V2O|1|A|A|668
7V2O|1|A|G|669
7V2O|1|A|U|670
7V2O|1|A|A|671
7V2O|1|A|G|672
*
7V2O|1|A|C|683
7V2O|1|A|G|684
7V2O|1|A|C|685
7V2O|1|A|A|686
7V2O|1|A|G|687
7V2O|1|A|A|688
7V2O|1|A|U|689
7V2O|1|A|A|690
7V2O|1|A|C|691

Current chains

Chain A
16s ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S11

Coloring options:


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