IL_7V2O_032

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2O_032 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1057

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7V2O|1|A|C|763
7V2O|1|A|A|764
7V2O|1|A|A|765
7V2O|1|A|A|766
7V2O|1|A|C|767
*
7V2O|1|A|G|783
7V2O|1|A|G|784
7V2O|1|A|U|785
7V2O|1|A|A|786
7V2O|1|A|G|787

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain U

Ribosomal RNA small subunit methyltransferase A