IL_7V2P_035

3D structure

PDB id

7V2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2P_035 not in the Motif Atlas

Geometric match to IL_7A0S_041

Geometric discrepancy: 0.3379

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

7V2P|1|A|C|902
7V2P|1|A|G|903
7V2P|1|A|G|904
7V2P|1|A|G|905
*
7V2P|1|A|U|1373
7V2P|1|A|U|1374
7V2P|1|A|G|1375

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S5