IL_7VYX_011

3D structure

PDB id

7VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the selenomethionine(SeMet)-derived Cas12c1 (D969A) ternary complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7VYX_011 not in the Motif Atlas

Geometric match to IL_1L9A_009

Geometric discrepancy: 0.2191

The information below is about IL_1L9A_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7VYX|1|D|C|13
7VYX|1|D|U|14
7VYX|1|D|U|15
*
7VYX|1|D|G|51
7VYX|1|D|U|52
7VYX|1|D|G|53

Current chains

Chain D

sgRNA

Nearby chains

Chain B

Selenomethionine (SeMet)-labeled Cas12c1 D969A mutant