IL_7W5B_016

3D structure

PDB id

7W5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of human C* complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7W5B_016 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.1271

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7W5B|1|F|G|88
7W5B|1|F|U|89
7W5B|1|F|G|90
*
7W5B|1|H|C|8
7W5B|1|H|U|9
7W5B|1|H|C|10

Current chains

Chain F

U6 snRNA

Chain H

U2 snRNA

Nearby chains

Chain L

Cell division cycle 5-like protein

Chain M

Pre-mRNA-splicing factor SYF2