IL_7WTL_001

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCA*UA

Length

5 nucleotides

Bulged bases

7WTL|1|C2|C|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTL_001 not in the Motif Atlas

Geometric match to IL_3SN2_001

Geometric discrepancy: 0.316

The information below is about IL_3SN2_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

7WTL|1|C2|U|24
7WTL|1|C2|C|25
7WTL|1|C2|A|26
*
7WTL|1|C2|U|600
7WTL|1|C2|A|601

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A