IL_7WTL_013

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

7WTL|1|C2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTL_013 not in the Motif Atlas

Homologous match to IL_8P9A_386

Geometric discrepancy: 0.5417

The information below is about IL_8P9A_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7WTL|1|C2|G|204
7WTL|1|C2|U|205
7WTL|1|C2|A|206
*
7WTL|1|C2|U|259
7WTL|1|C2|U|260
7WTL|1|C2|U|261
7WTL|1|C2|U|262
7WTL|1|C2|C|263

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A