IL_7WTL_022

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTL_022 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.0853

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

7WTL|1|C2|C|411
7WTL|1|C2|A|412
7WTL|1|C2|U|413
*
7WTL|1|C2|A|420
7WTL|1|C2|A|421
7WTL|1|C2|G|422

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain SG

40S ribosomal protein S6-A