IL_7WTN_010

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTN_010 not in the Motif Atlas

Geometric match to IL_4V88_393

Geometric discrepancy: 0.1079

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7WTN|1|C2|U|117
7WTN|1|C2|U|118
7WTN|1|C2|A|119
7WTN|1|C2|U|120
7WTN|1|C2|U|121
7WTN|1|C2|U|122
*
7WTN|1|C2|A|295
7WTN|1|C2|U|296
7WTN|1|C2|U|297
7WTN|1|C2|C|298
7WTN|1|C2|A|299

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SI

40S ribosomal protein S8-A