IL_7WTN_042

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUU*AUC

Length

7 nucleotides

Bulged bases

7WTN|1|C2|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTN_042 not in the Motif Atlas

Geometric match to IL_4V88_426

Geometric discrepancy: 0.2648

The information below is about IL_4V88_426

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7WTN|1|C2|G|819
7WTN|1|C2|U|820
7WTN|1|C2|U|821
7WTN|1|C2|U|822
*
7WTN|1|C2|A|850
7WTN|1|C2|U|851
7WTN|1|C2|C|852

Current chains

Chain C2

18S rRNA

Nearby chains