IL_7WTN_060

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGA*UUA

Length

7 nucleotides

Bulged bases

7WTN|1|C2|U|1657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTN_060 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.2494

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7WTN|1|C2|U|1656
7WTN|1|C2|U|1657
7WTN|1|C2|G|1658
7WTN|1|C2|A|1659
*
7WTN|1|C2|U|1742
7WTN|1|C2|U|1743
7WTN|1|C2|A|1744

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23-A