IL_7WTN_072

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTN_072 not in the Motif Atlas

Homologous match to IL_8CRE_402

Geometric discrepancy: 0.2993

The information below is about IL_8CRE_402

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

7WTN|1|C2|C|186
7WTN|1|C2|G|187
7WTN|1|C2|A|188
7WTN|1|C2|C|189
*
7WTN|1|C2|G|196
7WTN|1|C2|A|197
7WTN|1|C2|A|198
7WTN|1|C2|G|199

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A