IL_7WTO_014

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

7WTO|1|C2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTO_014 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.1771

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7WTO|1|C2|G|204
7WTO|1|C2|U|205
7WTO|1|C2|A|206
*
7WTO|1|C2|U|259
7WTO|1|C2|U|260
7WTO|1|C2|U|261
7WTO|1|C2|U|262
7WTO|1|C2|C|263

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A