IL_7WTO_043

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUU*AUC

Length

7 nucleotides

Bulged bases

7WTO|1|C2|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTO_043 not in the Motif Atlas

Geometric match to IL_2O3V_001

Geometric discrepancy: 0.2121

The information below is about IL_2O3V_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7WTO|1|C2|G|819
7WTO|1|C2|U|820
7WTO|1|C2|U|821
7WTO|1|C2|U|822
*
7WTO|1|C2|A|850
7WTO|1|C2|U|851
7WTO|1|C2|C|852

Current chains

Chain C2

18S rRNA

Nearby chains