IL_7WTO_044
3D structure
- PDB id
- 7WTO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AG*CAUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7WTO_044 not in the Motif Atlas
- Geometric match to IL_4V88_428
- Geometric discrepancy: 0.1437
- The information below is about IL_4V88_428
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
7WTO|1|C2|A|865
7WTO|1|C2|G|866
*
7WTO|1|C2|C|962
7WTO|1|C2|A|963
7WTO|1|C2|U|964
7WTO|1|C2|U|965
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S22-A
- Chain Sb
- 40S ribosomal protein S27-A
Coloring options: