3D structure

PDB id
7WTO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AG*CAUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTO_044 not in the Motif Atlas
Geometric match to IL_4V88_428
Geometric discrepancy: 0.1437
The information below is about IL_4V88_428
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

7WTO|1|C2|A|865
7WTO|1|C2|G|866
*
7WTO|1|C2|C|962
7WTO|1|C2|A|963
7WTO|1|C2|U|964
7WTO|1|C2|U|965

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SN
40S ribosomal protein S13
Chain SW
40S ribosomal protein S22-A
Chain Sb
40S ribosomal protein S27-A

Coloring options:


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