IL_7WTO_051

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTO_051 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.1934

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7WTO|1|C2|G|985
7WTO|1|C2|G|986
7WTO|1|C2|G|987
7WTO|1|C2|A|988
7WTO|1|C2|U|989
7WTO|1|C2|C|990
*
7WTO|1|C2|G|1014
7WTO|1|C2|U|1015
7WTO|1|C2|C|1016

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SO

40S ribosomal protein S14-A