IL_7WTP_024

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7WTP|1|C2|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTP_024 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.0893

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7WTP|1|C2|U|439
7WTP|1|C2|U|440
7WTP|1|C2|A|441
*
7WTP|1|C2|U|463
7WTP|1|C2|A|464

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein TSR1

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A