IL_7WTP_028

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

7WTP|1|C2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTP|1|C2|G|514
7WTP|1|C2|A|515
7WTP|1|C2|G|516
*
7WTP|1|C2|C|536
7WTP|1|C2|G|537
7WTP|1|C2|A|538
7WTP|1|C2|G|539
7WTP|1|C2|G|540
7WTP|1|C2|A|541
7WTP|1|C2|A|542
7WTP|1|C2|C|543

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A