3D structure

PDB id
7WTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
7WTP|1|C2|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTP_032 not in the Motif Atlas
Geometric match to IL_4FRG_002
Geometric discrepancy: 0.3904
The information below is about IL_4FRG_002
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

7WTP|1|C2|G|557
7WTP|1|C2|U|558
7WTP|1|C2|C|559
*
7WTP|1|C2|G|586
7WTP|1|C2|C|587

Current chains

Chain C2
18S rRNA

Nearby chains

Chain CB
18S rRNA (guanine(1575)-N(7))-methyltransferase
Chain Se
40S ribosomal protein S30-A

Coloring options:


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