3D structure

PDB id
7WTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GA*UUU
Length
5 nucleotides
Bulged bases
7WTP|1|C2|U|959
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTP_044 not in the Motif Atlas
Geometric match to IL_7KVT_002
Geometric discrepancy: 0.2591
The information below is about IL_7KVT_002
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

7WTP|1|C2|G|868
7WTP|1|C2|A|869
*
7WTP|1|C2|U|958
7WTP|1|C2|U|959
7WTP|1|C2|U|960

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SN
40S ribosomal protein S13
Chain Sb
40S ribosomal protein S27-A

Coloring options:


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