IL_7WTP_056

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAA*UUU

Length

7 nucleotides

Bulged bases

7WTP|1|C2|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTP_056 not in the Motif Atlas

Geometric match to IL_1MFQ_002

Geometric discrepancy: 0.3297

The information below is about IL_1MFQ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7WTP|1|C2|G|1149
7WTP|1|C2|G|1150
7WTP|1|C2|A|1151
7WTP|1|C2|A|1152
*
7WTP|1|C2|U|1626
7WTP|1|C2|U|1627
7WTP|1|C2|U|1628

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CA

Pre-rRNA-processing protein PNO1

Chain SC

40S ribosomal protein S2