IL_7WTS_031

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTS_031 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2612

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7WTS|1|2|U|566
7WTS|1|2|C|567
7WTS|1|2|C|568
7WTS|1|2|A|569
*
7WTS|1|2|U|581
7WTS|1|2|U|582
7WTS|1|2|A|583
7WTS|1|2|A|584

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24

Chain u

Pre-rRNA-processing protein TSR1 homolog