IL_7WTS_049

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTS_049 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.1418

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7WTS|1|2|A|1042
7WTS|1|2|G|1043
7WTS|1|2|G|1044
7WTS|1|2|U|1045
7WTS|1|2|U|1046
7WTS|1|2|C|1047
*
7WTS|1|2|G|1071
7WTS|1|2|U|1072
7WTS|1|2|U|1073

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

Probable dimethyladenosine transferase

Chain O

40S ribosomal protein S14