IL_7WTS_054

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTS_054 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2565

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

7WTS|1|2|G|1108
7WTS|1|2|C|1109
7WTS|1|2|G|1110
*
7WTS|1|2|C|1123
7WTS|1|2|C|1124

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

U3 small nucleolar RNA-associated protein 14 homolog A

Chain B

40S ribosomal protein S3a