IL_7WTS_057

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

7WTS|1|2|C|1215, 7WTS|1|2|C|1216

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTS_057 not in the Motif Atlas

Geometric match to IL_1KOG_007

Geometric discrepancy: 0.172

The information below is about IL_1KOG_007

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

7WTS|1|2|A|1214
7WTS|1|2|C|1215
7WTS|1|2|C|1216
7WTS|1|2|A|1217
*
7WTS|1|2|U|1681
7WTS|1|2|C|1682
7WTS|1|2|C|1683
7WTS|1|2|C|1684
7WTS|1|2|U|1685

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein

Chain q

Probable 18S rRNA (guanine-N(7))-methyltransferase