IL_7WTS_073

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTS_073 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.2154

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7WTS|1|2|G|1604
7WTS|1|2|G|1605
7WTS|1|2|G|1606
7WTS|1|2|A|1607
7WTS|1|2|U|1608
7WTS|1|2|C|1609
7WTS|1|2|G|1610
*
7WTS|1|2|C|1629
7WTS|1|2|A|1630
7WTS|1|2|U|1631
7WTS|1|2|G|1632
7WTS|1|2|A|1633
7WTS|1|2|A|1634
7WTS|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain q

Probable 18S rRNA (guanine-N(7))-methyltransferase