IL_7WTS_085
3D structure
- PDB id
- 7WTS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 7WTS|1|2|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7WTS_085 not in the Motif Atlas
- Geometric match to IL_4V88_457
- Geometric discrepancy: 0.3622
- The information below is about IL_4V88_457
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7WTS|1|2|A|599
7WTS|1|2|G|600
7WTS|1|2|G|601
7WTS|1|2|G|602
7WTS|1|2|C|603
7WTS|1|2|A|604
7WTS|1|2|A|605
7WTS|1|2|G|606
7WTS|1|2|U|607
7WTS|1|2|C|608
*
7WTS|1|2|G|635
7WTS|1|2|C|636
7WTS|1|2|U|637
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain J
- 40S ribosomal protein S9
- Chain X
- 40S ribosomal protein S23
- Chain e
- 40S ribosomal protein S30
- Chain q
- Probable 18S rRNA (guanine-N(7))-methyltransferase
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
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