IL_7WTT_035

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7WTT|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTT_035 not in the Motif Atlas

Geometric match to IL_5J7L_026

Geometric discrepancy: 0.1336

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7WTT|1|2|G|665
7WTT|1|2|U|666
7WTT|1|2|U|667
7WTT|1|2|A|668
7WTT|1|2|A|669
7WTT|1|2|A|670
7WTT|1|2|A|671
*
7WTT|1|2|U|1161
7WTT|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain u

Pre-rRNA-processing protein TSR1 homolog

Chain z

Ribosome biogenesis protein SLX9 homolog