IL_7WTT_045

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

7WTT|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTT_045 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.2499

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7WTT|1|2|G|925
7WTT|1|2|A|926
7WTT|1|2|C|927
*
7WTT|1|2|G|1014
7WTT|1|2|U|1015
7WTT|1|2|U|1016
7WTT|1|2|U|1017

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27