IL_7WTT_068

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7WTT|1|2|U|1326

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTT_068 not in the Motif Atlas

Geometric match to IL_3TZR_002

Geometric discrepancy: 0.3083

The information below is about IL_3TZR_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

148

Unit IDs

7WTT|1|2|G|1325
7WTT|1|2|U|1326
7WTT|1|2|G|1327
*
7WTT|1|2|C|1502
7WTT|1|2|C|1503

Current chains

Chain 2

18S rRNA

Nearby chains

Chain u

Pre-rRNA-processing protein TSR1 homolog

Chain w

Bystin