IL_7WTW_070

3D structure

PDB id

7WTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUG*CUGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTW_070 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.3917

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7WTW|1|2|A|1332
7WTW|1|2|U|1333
7WTW|1|2|G|1334
*
7WTW|1|2|C|1493
7WTW|1|2|U|1494
7WTW|1|2|G|1495
7WTW|1|2|U|1496

Current chains

Chain 2

18S rRNA

Nearby chains

Chain w

Bystin