IL_7WTX_064

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAAUUUGAC*GGCUG

Length

16 nucleotides

Bulged bases

7WTX|1|2|G|1245, 7WTX|1|2|U|1519

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTX|1|2|C|1237
7WTX|1|2|U|1238
7WTX|1|2|U|1239
7WTX|1|2|A|1240
7WTX|1|2|A|1241
7WTX|1|2|U|1242
7WTX|1|2|U|1243
7WTX|1|2|U|1244
7WTX|1|2|G|1245
7WTX|1|2|A|1265
7WTX|1|2|C|1266
*
7WTX|1|2|G|1516
7WTX|1|2|G|1517
7WTX|1|2|C|1518
7WTX|1|2|U|1519
7WTX|1|2|G|1520

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18

Chain u

Pre-rRNA-processing protein TSR1 homolog

Chain w

Bystin