IL_7WTZ_048

3D structure

PDB id

7WTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

7WTZ|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTZ_048 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.2423

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7WTZ|1|2|G|925
7WTZ|1|2|A|926
*
7WTZ|1|2|U|1015
7WTZ|1|2|U|1016
7WTZ|1|2|U|1017

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27