IL_7WTZ_070

3D structure

PDB id

7WTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

7WTZ|1|2|A|1498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTZ_070 not in the Motif Atlas

Geometric match to IL_7A0S_012

Geometric discrepancy: 0.2629

The information below is about IL_7A0S_012

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7WTZ|1|2|G|1330
7WTZ|1|2|C|1331
*
7WTZ|1|2|G|1497
7WTZ|1|2|A|1498
7WTZ|1|2|U|1499

Current chains

Chain 2

18S rRNA

Nearby chains

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog

Chain w

Bystin