IL_7WTZ_080

3D structure

PDB id

7WTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTZ_080 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1406

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7WTZ|1|2|G|1604
7WTZ|1|2|G|1605
7WTZ|1|2|G|1606
7WTZ|1|2|A|1607
7WTZ|1|2|U|1608
7WTZ|1|2|C|1609
7WTZ|1|2|G|1610
*
7WTZ|1|2|C|1629
7WTZ|1|2|A|1630
7WTZ|1|2|U|1631
7WTZ|1|2|G|1632
7WTZ|1|2|A|1633
7WTZ|1|2|A|1634
7WTZ|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S18

Chain T

40S ribosomal protein S19