IL_7XAM_034

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_034 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2824

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7XAM|1|A|C|991
7XAM|1|A|C|992
7XAM|1|A|G|993
7XAM|1|A|A|994
7XAM|1|A|U|995
7XAM|1|A|G|996
*
7XAM|1|A|C|1012
7XAM|1|A|U|1013
7XAM|1|A|G|1014
7XAM|1|A|A|1015
7XAM|1|A|C|1016
7XAM|1|A|G|1017

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25