IL_7XAM_037

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

7XAM|1|A|G|1085

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_037 not in the Motif Atlas

Geometric match to IL_4LVW_002

Geometric discrepancy: 0.3313

The information below is about IL_4LVW_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

7XAM|1|A|G|1066
7XAM|1|A|G|1067
*
7XAM|1|A|U|1084
7XAM|1|A|G|1085
7XAM|1|A|C|1086

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain B

5S ribosomal RNA; 5S rRNA

Chain a

50S ribosomal protein L30