IL_7XAM_048

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7XAM|1|A|A|1206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_048 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.2854

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XAM|1|A|G|1205
7XAM|1|A|A|1206
7XAM|1|A|G|1207
7XAM|1|A|U|1208
7XAM|1|A|G|1209
*
7XAM|1|A|C|1218
7XAM|1|A|U|1219
7XAM|1|A|C|1220

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36