IL_7XAM_073

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7XAM|1|A|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_073 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.0738

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7XAM|1|A|C|1904
7XAM|1|A|G|1905
7XAM|1|A|U|1906
7XAM|1|A|A|1907
7XAM|1|A|A|1908
7XAM|1|A|C|1909
*
7XAM|1|A|G|1914
7XAM|1|A|G|1915
7XAM|1|A|A|1916
7XAM|1|A|G|1917
7XAM|1|A|A|1918
7XAM|1|A|A|1919
7XAM|1|A|G|1920

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2