IL_7XAM_078

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

7XAM|1|A|G|2018, 7XAM|1|A|U|2033, 7XAM|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_078 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0934

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7XAM|1|A|U|2015
7XAM|1|A|G|2016
7XAM|1|A|C|2017
7XAM|1|A|G|2018
7XAM|1|A|A|2019
7XAM|1|A|A|2020
7XAM|1|A|G|2021
*
7XAM|1|A|C|2030
7XAM|1|A|G|2031
7XAM|1|A|A|2032
7XAM|1|A|U|2033
7XAM|1|A|G|2034
7XAM|1|A|U|2035
7XAM|1|A|A|2036
7XAM|1|A|U|2037
7XAM|1|A|A|2038

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2