IL_7XAM_099

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

7XAM|1|A|U|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_099 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1214

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

7XAM|1|A|A|2683
7XAM|1|A|U|2684
7XAM|1|A|C|2685
*
7XAM|1|A|G|2713
7XAM|1|A|G|2714
7XAM|1|A|U|2715
7XAM|1|A|U|2716
7XAM|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain N

50S ribosomal protein L16